Fiji

fiji

A "batteries-included" distribution of ImageJ :battery:

Trainable_Segmentation

Fiji library to perform image segmentation based on the Weka learning schemes

Stitching

Fiji's Stitching plugins reconstruct big images from tiled input images.

Auto_Threshold

SPIM_Registration

Deprecated, instead check out: https://github.com/preibischLab/multiview-reconstruction & https://github.com/PreibischLab/BigStitcher

3D_Viewer

register_virtual_stack_slices

Fiji package for registering and transforming arbitrarily large sequences of images

VIB

Fiji_Plugins

FilamentDetector

A Fiji plugin that allows easy, fast and accurate detection and tracking of biological filaments.

IO

MaMuT

The fiji plugin for Massive Annotation

fiji-builds

Downloadable Fiji bundles

Descriptor_based_registration

CorrectBleach

H5J_Loader_Plugin

H5J Reader Plugin for Fiji project.

KymographBuilder

KymographBuilder is Yet Another Kymograph Fiji plugin.

3D_Blob_Segmentation

View5D

Feature_Detection

FS_Align_TrakEM2

legacy-imglib1

OBSOLETE; see https://github.com/imglib/imglib2

Volume_Calculator

.github

Fiji organization profile

blockmatching

CPU_Meter

dotfiles

Configuration files for Fiji resources

Fiji_Developer

Reconstruct_Reader

TrakEM2_Archipelago