convert docs are broken

[Erick Matsen]

See http://seqmagick.readthedocs.org/en/latest/convert_mogrify.html towards the bottom.

[Connor McCoy]

Strange, the log looks like BioPython gets installed:
https://readthedocs.org/builds/seqmagick/1871148/. Perhaps it's not running
in the virtualenv?

On Mon, Nov 17, 2014 at 4:13 PM, Erick Matsen [e-mail]
wrote:

See http://seqmagick.readthedocs.org/en/latest/convert_mogrify.html
towards the bottom.

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#43.

[Brian Claywell]

There's an open issue upstream (readthedocs/readthedocs.org#814) surrounding the sphinxcontrib-programoutput extension. Per one of the comments there I tried forcing the builder to use different versions of sphinx than the current default of 1.2.2 by changing doc-requirements.txt, both older (1.1.3) and newer (1.3b1), with no success.

[bunnyhutch]

OK, no worries. Let's leave it broken until they fix upstream.

On Wed, Dec 3, 2014 at 6:55 PM, Brian Claywell [e-mail]
wrote:

There's an open issue upstream (readthedocs/readthedocs.org#814
readthedocs/readthedocs.org#814) surrounding the
sphinxcontrib-programoutput extension. Per one of the comments there I
tried forcing the builder to use different versions of sphinx than the
current default of 1.2.2 by changing doc-requirements.txt, both older
(1.1.3) and newer (1.3b1), with no success.

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#43 (comment).

Frederick "Erick" Matsen, Assistant Member
Fred Hutchinson Cancer Research Center
http://matsen.fhcrc.org/

[Erick Matsen]

@bcclaywell, the issue you linked to is now closed. Does this mean that we can get RTD working again?