fawda123 / EBASE

Estuarine Bayesian Single-station Estimation

EBASE

R package for Estuarine BAyesian Single-station Estimation (EBASE) method for ecosystem metabolism.

Installation

Install the package as follows:

# Install EBASE in R:
install.packages('EBASE', repos = c('https://fawda123.r-universe.dev', 'https://cloud.r-project.org'))

The JAGS software must also be installed to use this package. Follow the instructions in the link to download and install the version appropriate for your operating system.

Minimal example

library(dplyr)
library(lubridate)
library(doParallel)

# get four days of data
dat <- exdat %>%
  filter(month(DateTimeStamp) == 6 & day(DateTimeStamp) %in% 1:4)

##
# run ebase with defaults

# setup parallel backend
cl <- makeCluster(2)
registerDoParallel(cl)

res <- ebase(dat, interval = 900, H = 1.85, progress = TRUE)

stopCluster(cl)