Edward Wallace's repositories
CryptoGat201RNASeq
Cryptococcus neoformans RNA-seq Gat201 strains 2021.
ewallace.github.io
Wallace Lab website
2024_Cryptococcus_Ssd1motifs
Ssd1-binding motifs in Cryptococcus neoformans
big-fish-trial-2022-10
trial of big-fish for smFISH analysis, October 2022
CryptoGat201_2023_suppdata
Supplementary data for Gat201 paper, May 2023.
CryptoWakeupRNASeq
Cryptococcus neoformans RNA-seq Wakeup experiment from 2017, reanalyzed 2022.
DEB_development
Developing a data exploration course for second year
demo-RNAFracQuant
A demo r package RNAFracQuant
drummondlab.github.io
Drummond Lab site
FLC-like-phylogeny
Phylogeny of FLC-like proteins from fungi and others
Gat201_RTqPCR_Assay
RTqPCR of WT, Gat201 deletion, Complemented clones C26 and C30. Genes tested Gat201, Gat204 and Liv3. 3 reference genes.
Gat201homology_2022
Analysis of homology of Cryptococcus neoformans Gat201 and related GATA-family transcription factors
ggplot2
An implementation of the Grammar of Graphics in R
good-enough-practices
Good Enough Practices in Scientific Computing
high-dimensional-stats-r
High-Dimensional Statistics
Khd1_CRAC_analysis
Analysis on the CRAC sequencing data of yeast RNA binding protein Khd1/Hek2
Pbp2_CRAC_analysis
Analysis on the CRAC sequencing data of yeast RNA binding protein Pbp2/Hek1
PR_Gat201targets
To check the phenotype of downstream targets of GAT201 in RPMI at 37 degrees
Rice_roots
Rice_RNASeq_data
rnaseq_dough
RNA-seq analysis of yeast during bread dough fermentation for teaching Autumn 2023
RPMI_YPD_PRAssay
Test growth of WT H99 and Gat 201 deletion mutants 003 (Madhani) and 004 (Bahn) in RPMI and YPD at 37 degrees.
SedSeqQuant
R package for performing SedSeq analysis