evo-design / evo

Biological foundation modeling from molecular to genome scale

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Scoring DNA with lineages

hmms117 opened this issue · comments

Hi,

First of all, great work with Evo and for sharing the models.

Since you can prompt the model with lineages, I am wondering if it is possible to calculate scores or log likelihoods for a DNA sequence given a specific lineage? For example, would a prompt in the following style work?

|d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis | ATGA..<DNA>

Many thanks

This could definitely be possible!

Note that there are no spaces separating the right vertical bar and the DNA