ersilia-os / eos69e6

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Dockerhub failed

miquelduranfrigola opened this issue · comments

Hey @DhanshreeA ! Upload to DockerHub failed, unfortunately. I did not check it in detail: https://github.com/ersilia-os/eos69e6/actions/runs/8819235364

Across the two runs for this job, I see from the logs that a certain C library isn't present here. I'll try adding that to the Dockerfile explicitly.

2024-04-24T15:43:44.8831647Z #9 142.3 ImportError: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.26' not found (required by /usr/bin/conda/envs/eos69e6/lib/python3.8/site-packages/scipy/linalg/_matfuncs_sqrtm_triu.cpython-38-x86_64-linux-gnu.so)

Experimenting with solutions here.

The likely fix is to install libgcc within the conda environment, and then exporting the C libraries to the python script running the model by way of setting LD_LIBRARY_PATH in run.sh

Hi @DhanshreeA

Can you update this issue with the current status of the model fixing? I'd need this model as soon as possible for chemsampler