Eljas Roellin's repositories
anndata
Annotated data.
cellrank
CellRank: dynamics from multi-view single-cell data. See the docs:
CoMP
CoMP: Contrastive Mixture of Posteriors
ehrapy
Electronic Health Record Analysis with Python.
ehrapy-tutorials
Tutorials for ehrapy
fknni
Lightning fast KNN imputation
imbalanced-learn
A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning
mudata
Multimodal Data (.h5mu) implementation for Python
muon-tutorials
Tutorials for multimodal omics data analysis
pertpy
Perturbation Analysis in the scverse ecosystem.
PathomicFusion
Fusing Histology and Genomics via Deep Learning - IEEE TMI
SARS-COV2-Neumeldungen-der-Kantone
Einfache Graphische Darstellung der neugemeldeten SARS-COV2 Infektionen der Kantone
scanpy
Single-cell analysis in Python. Scales to >1M cells.
scverse-tutorials
Tutorials for learning scverse
scvi-tools
Deep probabilistic analysis of single-cell omics data
simbsig
The official implementation for the SIMBSIG package
single-cell-best-practices
https://www.sc-best-practices.org
squidpy
Spatial Single Cell Analysis in Python