era7 bioinformatics

projects

std datatypes for data analysis projects

db.rna16s18s

a database with 16S and 18S sequences

db.peces16s

A one-off 16S db for fish (who knew?)

report.g8

db.rna18s

bundles

std AWS-tested bioinformatics bundles

pandoc-revealjs-slides

A template for creating slides with pandoc markdown and reveal.js

cmdlineapp.g8

a giter8 template for a scala command-line tool, using conscript and scallop

.pandoc

a base .pandoc folder, including custom templates

report.preprocessing

md2pdf

a wrapper around pandoc for converting markdown to pdf

mummer.install

ngs-for-clinicians

work on Mehis Pold idea: an open source tool that facilitates interpretation of a whole-genome NGS genetic finding for clinicians

prinseq.install

oases.install

github-archive

a copy of some stuff from https://github.com/codepill/script-utilities

gtt

fork of git time tracker -> http://gitorious.org/gtt/gtt

express.install

bamtools.install

tophat.install

samtools.install

boost.install

bowtie.install

bowtie2.install

bwa.install

md2slides

generate slides from md with our custom pandoc templates

amos.install

install AMOS

tool.install.g8

a giter8 template for creating shell app installers

vanilla.g8

simple project template

conscript.g8

Create conscript programs