emmamglass

reconstructor

This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and benchmarking scores for reconstructor models. Reconstructor is a COBRApy compatible, automated GENRE building tool from gene fastas based on KEGG annotations.

Multiscale-PBPK-Nanoparticle-Biodistribution-Model

This repository contains all matlab code files relevant to the Physiologically Based Multiscale Pharmacokinetic Model for Determining the Temporal Biodistribution of Targeted Nanoparticles paper

Gardnerella-Interactions

Gardnerella_Pangenome

This repository contains all metabolic network reconstructions pertaining to the "Metabolic network models of the Gardnerella pangenome identify key interactions in the vaginal environment" paper

GardnerellaPangenomeMEMOTE.io

PATHGENN

This repository contains code pertaining to the paper titled "Evolution shapes metabolic function and niche-specific antimicrobial targets in pathobionts"

PATHGENN_scripts

This repository will contain all code pertaining to the pathobiont genome scale metabolic network reconstruction ensemble database project.

Personal-Website

This respository contains all source code for my personal website: emmamglass.com

ReconstructorMEMOTE.io

This repository contains all stable .html files for the MEMOTE scores mentioned in the Reconstructor paper

SARS-Cov2-Biosurveillance-Simulation

This repository contains all scripts pertaining to the SARS Cov2 Bisurveillance Simulation Project.