Awesome COVID-19 resources
A curated list of awesome data science, analytics and computer programming resources for COVID-19.
Datasets
- COVID-19 DATABASE: COVID-19: CASISTICA RADIOLOGICA ITALIANA - Italian database with CT images of lungs.
- Coronavirus-Dataset: Dataset of COVID-19 in South Korea - South Korean dataset detailing virus spread routes.
- COVID-19 Open Research Dataset (CORD-19) - dataset with scholarly articles about COVID-19.
- European Centre for Disease Prevention and Control - geographic distribution of COVID-19 cases worldwide
- Data Repository by Johns Hopkins CSSE
Bioinformatics
- SARS-CoV-2 and COVID-19 Pathway (Homo sapiens) - WikiPathways model
Tools
- cord-19-tools - David Josephs' pip-installable python package to load the COVID-19 Open Research Dataset (CORD-19) dataset. A full load take 5 GB of memory.
Visualizations
- Shiny App - Interactive visualization as shiny app by @nicebread et al
- Visual Dashboard - Coronavirus COVID-19 Global Cases by the Center for Systems Science and Engineering (CSSE) at Johns Hopkins University (JHU) described in An interactive web-based dashboard to track COVID-19 in real time.
Papers
- Abnormal respiratory patterns classifier may contribute to large-scale screening of people infected with COVID-19 in an accurate and unobtrusive manner - Description of recurrent neural network predicting 6 respiratory patterns from depth camera data (Scholia)
Lung-CT deep learning
- A deep learning algorithm using CT images to screen for Corona Virus Disease (COVID-19)
- Deep learning-based model for detecting 2019 novel coronavirus pneumonia on high-resolution computed tomography: a prospective study in 27 patients
- Deep Learning-Based Quantitative Computed Tomography Model in Predicting the Severity of COVID-19: A Retrospective Study in 196 Patients