Genome alignment service/implementation
eltonlaw opened this issue · comments
Either writing a shell call or setting up a lambda/ecs service to run something that already exists:
- https://github.com/BenLangmead/bowtie2
- https://github.com/bwa-mem2/bwa-mem2
- https://github.com/DaehwanKimLab/hisat2
- https://bioinformaticshome.com/tools/rna-seq/descriptions/GSNAP.html#gsc.tab=0
- https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html
Or handrolling one of the simpler algorithms:
- Needleman-Wunsch
- Smith-Waterman