Exome capture kit bed file compatibility
oskarvid opened this issue · comments
NorSeq wants to use specific bed files for exome analysis, we need to make sure that these bed files are either a) compatible with the current reference file version (b37 decoy) or b) procure reference files that are compatible with the bed file.
To do: Ask Rita and Tina for their exome enrichment kit bed files.
To do: Ask Rita and Tina for their exome enrichment kit bed files.
They have been contacted, I am currently awaiting reply.
To do: Ask Rita and Tina for their exome enrichment kit bed files.
They have been contacted, I am currently awaiting reply.
I have received bed files from both of them now.
Rita gave me the following files:
MedExome_hg38_empirical_targets.bed (43.8 MB)
MedExome_hg38_capture_targets.bed (52.6 MB)
MedExome_hg19_empirical_targets.bed (34.2 MB)
MedExome_hg19_capture_targets.bed (40.6 MB)
And Tina gave me this file:
agilent_b37_exome_v5_covered.bed (4.8MB)
I have begun poking around, will update along the way.