eLife Sciences's repositories
drug-synergy
Code for "The transcriptomic response of cells to a drug combination is more than the sum of the responses to the monotherapies"
tracing_quantification_and_analysis
FIJI macros and python scripts to quantify and analyse RV and AAV tracings
ActinEnrichment
ImageJ plug-in to quantify the enrichment of a certain protein on actin filaments
biteOscope
scripts for running biteOscope and processing data
chronic_neuropixels
A manuscript on the protocol on chronic recording from Neuropixels probes
eFOV_microendoscopes_sim
Simulations code for Antonini et al
hpo_ova_eggL_screen
Topology-driven analysis of protein-protein interaction networks detects functional genetic modules regulating reproductive capacity
KSCIRC-Gait-Addin
Microsoft Excel Gait analysis Add-in for videos digitized in Maxtraq
m3ha_published
Associated code for Lu et al 2020 eLife ("Nonlinearities between inhibition and T-type calcium channel activity bidirectionally regulate thalamic oscillations")
MaLab_spec_subs
Final repository for GS specific residue analysis for ATP5G1 project
metapop
Accompanying code for Shapiro et al. 2019
n5
Not HDF5
PercevalHR-fluorescence-intensity
To track cell and measure PercevalHR fluorescence intensity
PPiSeq
code for second PPiSeq paper
topologicalConstraintsSpecialization
code to generate data and figures for "Topological Constraints In The Origin of Adaptive Specialization"
undead-walking
Supporting code for Pop et al., 2020
ventroposterior-hypothalamus-scrna-seq
Code to reproduce analysis and figures for scRNA-seq analysis of the ventroposterior hypothalamus in Mickelsen et. al 2020