Esha Joshi's repositories
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
hello
Classic hello world script in Nextflow language
nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
nf-test-scripts
Minimal, reproducible examples for testing of NF and/or Tower bugs
proteinfold
Protein 3D structure prediction pipeline
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
seqera-platform-tools
Set of scripts to interact with Seqera Platform
showcase
Infrastructure as code implementation of the seqeralabs/showcase Workspace in Tower Cloud
test-datasets
Test data to be used for automated testing with the nf-core pipelines
tw-e2e-poc
POC for automating Tower setup and pipeline launching through the CLI with GCP as a use-case
tw-pywrap-ci
Run e2e tw-pywrap implementation via CI