edmundmiller / auto-wave

Warning

This project has been deprecated as it was a proof of concept. Use Seqera Containers instead.

Auto-wave

Build ad-hoc containers with bioinformatics software.

We'll add freezing and pushing to a container registry soon™️!

From a file

0. Create a directory
1. Create an environment.yml or Dockerfile file in that directory
2. Commit, push and open a PR to repo
3. Dig through the CI logs and find your container!

Ad-hoc

1. Go to the Manual Container Build page.
2. Click on the Run workflow drop-down button.
3. Enter a string of conda packages to install.

Some valid examples:

• bioconda::bowtie=1.3.0 bioconda::samtools=1.16.1
• bowtie=1.3.0 samtools

Versions and channels are optional. Optional dependencies are up to you!

4. Dig through the CI logs and find your container!