dylan-wu

kallisto

Near-optimal RNA-Seq quantification

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

bioconda-recipes

Conda recipes for the bioconda channel.

svtools

Tools for processing and analyzing structural variants.

smoove

structural variant calling and genotyping with existing tools, but, smoothly.

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

ViennaRNA

The ViennaRNA Package

zsh-yarn-autocompletions

Zsh plugin for Yarn autocompletions.

awesome-nlp

:book: A curated list of resources dedicated to Natural Language Processing (NLP)

GCB535

Materials for GCB535 at Penn.

guide

Serverless Guide - An open-source definitive guide to serverless architectures.

Project-Euler-solutions

Runnable code for solving Project Euler problems in Java, Python, Mathematica, Haskell.

oneliners

Useful bash one-liners for bioinformatics.

coel

COEL (Cloud Chemistry Simulation Framework)

CRNSimulator

sleuth

Differential analysis of RNA-Seq

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

Unicycler

hybrid assembly pipeline for bacterial genomes

rootstock

Clone me to create your Manubot manuscript

python-tutorial-notebooks

Python tutorials as Jupyter Notebooks for NLP, ML, AI

datasharing

The Leek group guide to data sharing

jupyter_notebook_beginner_guide

A brief guide to install and run Jupyter/IPython notebooks

custom-fonts-in-emails

An extremely easy way to use custom fonts in emails without having to use art software.

python-for-genomics-miniseries

A highly condensed intro to Python using interactive Jupyter notebooks

scholdoc-examples

Examples of documents written in ScholarlyMarkdown and converted with Scholdoc

anki-adder-plus

"Anki Adder" Chrome plugin

continuous_analysis

Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.

feature-demo

Demonstrations of markdown presentation features to the GitPitch community.

react-tic-tac-toe

A React implementation of Tic Tac Toe for one or two players

gen_metrics

Elixir GenServer and GenStage runtime metrics.