DWLS package installation error
sumanm99 opened this issue · comments
I was trying to install the DWLS package in R via devtools::install_bitbucket("yuanlab/dwls", ref="master"). But the installation gives this error Error: object 'zlm.SingleCellAssay' is not exported by 'namespace:MAST'.
The available versions of MAST do not export SingleCellAssay. So, this error cannot be resolved by installing any of the MAST package versions either.
Below you can find a screenshot of the error generated in R. Could you please tell a way to resolve this?
link
I hope to get a reply from you at the earliest.
Thank you.
Hello, thank you for your interest in DWLS.
We are in the process of updating DWLS, the main repo has moved here. Would you mind trying to install the package this way:
library(devtools)
install_github("sistia01/DWLS")
Let me know if you have any issues.
Dear,
The package installation was successful.
But there are errors generated with buildSignatureMatrixMast() when I run it on my single cell data matrix. This issue has been reported previously too #7.
Could you please suggest ways to overcome this error? You can find a screenshot of the same below.
I have used a single cell RNAseq matrix with the labels as the Cell types of that reference data.
Hello, thank you for your interest in DWLS.
We are in the process of updating DWLS, the main repo has moved here. Would you mind trying to install the package this way:
library(devtools)
githubinstall("sistia01/DWLS")Let me know if you have any issues.
Should it be install_github()?😅