dtenenba

workflow-engine-comparison

actions-test

ansible-docker-swarm

aws-genomics-workflows

Genomics Workflows on AWS

awsbw

A small CLI utility to view jobs in an AWS batch queue

bc_example_dan_rstudio

bc_example_flaskapp

bc_example_jupyter

Batch Connect - Example Jupyter Notebook Server

bc_osc_example_shiny

Batch Connect - Example Shiny App that runs on OSC OnDemand

bc_osc_rstudio_server

Batch Connect - OSC RStudio Server

bc_rcc_rstudio_server

RStudio Server app for Open OnDemand (no Singularity)

cloudgene

A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

dtenenba

easybuild-life-sciences

Howto and implementation documentation

example-actions-flux-eks

GitHub Actions, Flux, and Amazon EKS ✨

fabric

Simple, Pythonic remote execution and deployment.

fh.wdlR

A repo containing a basic R package for using Cromwell with WDL workflows at Fred Hutch. (Contact Amy Paguirigan for help).

FH_Cluster_Guide

flask_passenger_wsgi_hello

GitHub-Action-for-pylint

A GitHub Action to run a pytest command when new code is pushed into your repo

gitlabtest

hello

Classic hello world script in Nextflow language

hpc-toolset-tutorial

Tutorial for installing Open XDMoD, OnDemand, & ColdFront

mermaid-test

motuz

Motuz - A web based infrastructure for large scale data movements between on-premise and cloud

OrchestratingSingleCellAnalysis

An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.

rnaseq-nf

A proof of concept of RNAseq pipeline

s3-cp-action

GitHub Action to `cp` a file to a remote S3 bucket. Forked from jakejarvis/s3-sync-action

sci-pkg

a loose collection of functions used in Scientific Computing put into a python package

slurm-cluster

Docker local slurm cluster