Daniel Bergman's repositories
tumor-immune-emt-code
Code associated with Bergman, Karikomi, Nie, MacLean (2019). Modeling the competing effects of the immune system and EMT on tumor development.
Agents.jl
Agent-based modeling framework in Julia
cheatsheets
My cheatsheets
GlobalMethod-PhenotypeSwitching
Source code used to run simulations related to global method in the context of phenotype switching.
GlobalVsLocal
Repository of code for establishing how the global method compares to the local method for the paper "A global method for simulating intracellular signaling reduces computational time in multiscale agent-based models with systems biology applications"
Intro-to-MATLab-Python
Files for use in the UCI Math Department's Intro to MATLab/Python seminar
Math2D
A repository for UCI's Math 2D (differential multivariable calculus) material to help students interact with the material.
PhysiCell
PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
Tumor-Immune-EMT
A repository for writing this paper.