draeger-lab / SBSCL

The Systems Biology Simulation Core Library (SBSCL) provides an efficient and exhaustive Java implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution.

Home Page:https://draeger-lab.github.io/SBSCL/

Repository from Github https://github.comdraeger-lab/SBSCLRepository from Github https://github.comdraeger-lab/SBSCL

Support for FBA FROG analysis

matthiaskoenig opened this issue · comments

SBSCL has a working FBA model solver. As part of the recent HARMONY we developed basic FROG guidelines. See also https://github.com/matthiaskoenig/fbc_curation/. SBSCL should support the generation of these files for a given FBA model. This would allow to check reproducibility easily between different solvers.
The biomodels database team would apply these guidelines for FBA model curation.