altai
Online morphological ROI detection for large-scale calcium imaging.
Documentation and example data forthcoming.
Contents:
bayes - experiments with Bayesian fitting of neuron shapes. Deprecated.
gpu - GPU-optimized implementation of online detection pipeline. Will also run on machines without a GPGPU, albeit slowly.
morph - Morphology routines for online detection pipeline.
src - Core functions for small-to-medium scale online detection pipeline.
util - helper functions
vis - visualize the results of ROI detection