dpeerlab / Palantir

Single cell trajectory detection

Home Page:https://palantir.readthedocs.io

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Make rpy2 as an optional dependency

ManuSetty opened this issue · comments

rpy2 is only necessary for plotting gene expression trends. Thus, rpy2 should be optional and installation prompted if the user attempts plotting expression trends.

setup.py was updated such that rpy2 is now optional, and can be installed when necessary. Instructions added to README on how to include rpy2 during installation of Palantir.