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breakdancer

SV detection from paired end reads mapping

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HugeSeq

For original Nature Biotechnology Publication (Q1 2012)

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slurm

Slurm: A Highly Scalable Workload Manager

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sbt-onejar

Packages your project using One-JAR™

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piper

A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (make sure you fork from there)

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gatk

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

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xptemplate

Code snippets engine for Vim, with snippets library. XPTemplate let you write codes in a smooth, quick and comfortable way.

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tslime.vim

Send command from vim to a running tmux session

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seqscripts

Scripts for parsing the output from the Tophat/Cufflinks/Cuffcompare pipeline into other formats and analyzing and editing GTF files.

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calculating_pcc_case_study

calculating pcc case study

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junkdrawer

collection of small scripts or how-tos that don't fall under a separate project

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🙃 A delightful community-driven (with 2,300+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

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downsea