donutbrew

AdminLTE

Pi-hole Dashboard for stats and more

amplicon_coverage_plot

interactive barplot for amplicon sequencing

ATEM-Loader

Script to pull slides from a source, like Google Slides, and load them into predefined slots in an ATEM video switcher

bamclipper

Remove primer sequence from BAM alignments by soft-clipping

barcoding

Naïve barcode deconvolution for amplicons

BBTools-ARM

Bio-EUtilities

Low-level OO Perl interface for NCBI's eutils

BIO_scripts

Various scripts

brewcompetitiononlineentry

cutadapt-parallel

wrapper for cutadapt to parallelize it and make it faster

DynSilo

Perl script to keep your Name Silo domain record in sync with your IP address

EDGE

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

fixsuperior

Website

flash

nextclade

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

picframe_colepd

A WiFi picture frame allowing for remote photo uploads, using an ESP32-C3 and a 5.6" color E-ink display

primalscheme

ProblematicSites_SARS-CoV2

SARS-CoV-2_Sequencing

Schedule--SGELK

Perl module for scheduling tasks, with only using qsub/qstat/qdel. A very portable scheduler.

seqan

SeqAn's official repository.

snap

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

snippy

:scissors: :zap: Rapid haploid variant calling and core genome alignment

spork-manager

Parallel process manager for bash. Yeah, it's not the best tool for the job, but when you have it...

spyne

SURPI-plus-dist

taxomias

an easy to use implementation of the NCBI taxonomy database for daily use

taxy

A simplified method for accessing NCBI Taxonomy locally, including accession names

themes

blink themes collection