Dongze He's repositories
alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Rust-tutorials
The slides and examples used in UMD CMSC388Z -- programming in rust
single-cell-best-practices
This project is work in progress! https://www.sc-best-practices.org
alevinQC
Create QC and summary reports for Alevin output
Bloom-Filter-Implementation
This repository is for bloom filter and block bloom filter implementation
CellOracle
This is the alpha version of the CellOracle package
chrombpnet
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
fishpond
Differential transcript and gene expression, as well as helper functions for working with Salmon, alevin, and alevin-fry data.
libgff
A simple GFF/GTF parsing library in C++
All-Programming-E-Books-PDF
A Curated List Of Programming Books For C, C++ , Python, JavaScript, NodeJs, ReactJs, Web, JQuery, Flask, Dom, Angular, CSS, HTML for beginners, intermediate, advanced and experts
GenomicRanges
GenomicRanges in Python
salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
sc-SHC
Significance analysis for clustering single-cell RNA-sequencing data
scvelo
RNA Velocity generalized through dynamical modeling
simpleaf_citeseq_nextflow
A nextflow workflow for processing CITE-seq data using simpleaf
Succinct-structure
CMSC858D succinct structure assigment
The-result-if-you-are-stopped-by-police
Predicting the result if you are stopped by police in Montana today by your car's color, your gender and age.
usefulaf
Useful scripts and tools related to alevin-fry