Packages are failing when I install them with the official Julia Docker
killah-t-cell opened this issue · comments
I am trying to build a Docker image for my package based on the official Julia image. Sadly, some packages always fail when being precompiled or instantiated. This prevents me from putting my package on a Docker container.
Here is my Dockerfile. Am I doing anything wrong or is this a bug?
FROM julia:latest
WORKDIR /app
ADD *.toml /app/
RUN julia --project=/app -e "using Pkg; Pkg.instantiate(); Pkg.precompile()"
ADD . /app
RUN julia --project=/app -e "using PackageName"
CMD ["julia", "--project=/app", "/app/src/PackageName.jl"]
Some packages that never fail locally are failing here.
Please create a Minimal, Reproducible Example; Now the "*.toml" is missing.
and maybe in the https://discourse.julialang.org/ somebody can help you in debugging.
This Dockerfile is working for me - so no missing dependencies.
FROM julia:latest
RUN julia -e 'using Pkg; Pkg.add(["Quadrature"]);'
RUN julia -e 'using Pkg; Pkg.add(["DiffEqSensitivity"]);'
RUN julia -e 'using Pkg; Pkg.add(["DiffEqFlux"]);'
RUN julia -e 'using Pkg; Pkg.status();'
✓ Quadrature
✓ CUDA
✓ NNlibCUDA
✓ Flux
✓ OrdinaryDiffEq
✓ DiffEqCallbacks
✓ StochasticDiffEq
✓ ModelingToolkit
✓ DiffEqSensitivity
✓ GalacticOptim
✓ DiffEqFlux
88 dependencies successfully precompiled in 593 seconds (97 already precompiled)
Removing intermediate container 094191436f34
---> 72b644c6e251
Step 5/5 : RUN julia -e 'using Pkg; Pkg.status();'
---> Running in c8da147218ac
Status `~/.julia/environments/v1.6/Project.toml`
[aae7a2af] DiffEqFlux v1.39.0
[41bf760c] DiffEqSensitivity v6.49.1
[67601950] Quadrature v1.10.0
Removing intermediate container c8da147218ac
---> e9e0c798bbc1
Successfully built e9e0c798bbc1
Successfully tagged jldeb:latest
Are you using the latest julia:latest
image ?
$ docker pull julia:latest
latest: Pulling from library/julia
Digest: sha256:08b875bc9d121a25c2cb66989f8395b42ae8a58888f087d2d12a127034f87634
Status: Image is up to date for julia:latest
docker.io/library/julia:latest
$ docker images julia:latest
REPOSITORY TAG IMAGE ID CREATED SIZE
julia latest aa1a7d560fa8 6 days ago 487MB
Did you try the suggested way to see more errors from your screenshot? (Pkg.precompile()
)
In any case, I don't think this is necessarily a problem with the image so is probably better to ask on https://discourse.julialang.org/.
Turns out my Docker was out of memory so things failed. It now works perfectly. Thanks for the help.