djoshea

Dan O'Shea's repositories

vim-autoread

Have Vim automatically reload a file that has changed externally

Language:Vim Script99 4 5

neuropixel-utils

Utilities for managing Neuropixel datasets and Kilosort results

Language:MATLABMIT42 9 13

matlab-save-figure

Cross-platform figure export from Matlab to SVG, PDF, PNG, etc. preserving transparency

Language:MATLABGPL-2.039 7 7

matlab-utils

Collection of miscellaneous shared utils for Matlab

Language:MATLAB32 7 1

matlab-barplot

Automatic bar & violin plots with groups, whiskers, significance bridges

Language:MATLAB27 3 1

eraasr

ERAASR: An algorithm for removing electrical stimulation artifacts from multielectrode array recordings

Language:MATLAB12 2 1

obci

Code for real-time, low-latency processing of 2P calcium imaging data streaming from PrairieView

Language:MATLABGPL-3.09 30

matlab-auto-axis

Custom automatically redrawing axis widgets for Matlab figures

Language:MATLABGPL-3.08 20

haptic-control

Real-time controller of Force Dimension delta.3 for reaching tasks on Chai3D

Language:C++GPL-3.07 30

trial-data

Interfaces and utilities for analysis of neurophysiology and behavioral data

Language:MATLAB4 4 9

matdb

In memory relational database and database-driven analysis layer for Matlab

Language:MATLAB3 20

matlab-imagestack

Lightweight Matlas class which wraps multichannel ImageStacks

Language:Matlab3 20

cvVectorStats

Cross-validated estimation of Euclidean distance (and other multivariate statistics)

Language:MATLABMIT2 10

Kilosort2

Fast spike sorting with drift correction for up to a thousand channels

Language:CudaGPL-2.02 20

lfads-neural-stitching-reproduce

Code and data to reproduce neural stitching results in LFADS paper

Language:MATLAB2 10

sphinxcontrib-matlabdomain

Temporary development clone of sphinxcontrib Matlab Domain

Language:PythonNOASSERTION2 30

matlab-quiver

Matlab interfaces to append text to Quiver notes

Language:MATLAB1 20

matudp

Bus communication layer and data logger for Simulink Real Time (xPC Target)

Language:MATLABGPL-3.01 2 3

mksort

Spike sorter for electrophysiology data

Language:Matlab1 20

seqMultiTaskRNN

sequential learning in orthogonal subspaces

Language:Jupyter Notebook1 10

vim-dotvim

My personal .vim directory

Language:Vim Script1 20

dotFiles

Personal configuration files

Language:Shell020

gollum

A simple, Git-powered wiki with a sweet API and local frontend.

Language:JavaScriptMIT030

imatlab

A Jupyter kernel for MATLAB.

Language:PythonMIT020

matlab-netrep

Matlab port of Generalized Shape Metrics on Neural Representations

Language:MATLAB020

matlab_kernel

Jupyter Kernel for Matlab

Language:Jupyter NotebookNOASSERTION020

models

Models built with TensorFlow

Language:PythonApache-2.0030

pymanopt

Python toolbox for optimization on Riemannian manifolds with support for automatic differentiation

Language:PythonBSD-3-Clause010

quickswitch-for-i3

A python utility to quickly change to and locate windows in i3

Language:PythonWTFPL020

teetool

a package to support with the statistical analysis of trajectory data

Language:Jupyter NotebookMIT000