Error: Cannot find proj.db on Mac OS 13.4
jamiemkass opened this issue · comments
I am working with an renv environment and trying to use geom_spatraster(), but keep getting Error: node stack overflow and GDAL Error 1: PROJ: proj_create_from_database: Cannot find proj.db errors. Not sure why because I have terra installed on the lockfile, I am able to use terra functions, and have the latest proj installed. I even used configure.args to set the path to my proj.db file installed via Homebrew, but for some reason renv has issues when using tidyterra functions only. Any ideas?
Thanks very much.
Here's my session info:
R version 4.3.1 (2023-06-16)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Ventura 13.4
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: Asia/Tokyo
tzcode source: internal
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] ggtext_0.1.2 occCite_0.5.6 dismo_1.3-14 raster_3.6-23 sp_2.0-0 ggplot2_3.4.2 tidyterra_0.4.0 terra_1.7-46
loaded via a namespace (and not attached):
[1] RColorBrewer_1.1-3 rstudioapi_0.15.0 jsonlite_1.8.7 magrittr_2.0.3 spatstat.utils_3.0-3
[6] farver_2.1.1 rmarkdown_2.23 ENMeval_2.0.4 vctrs_0.6.3 rstatix_0.7.2
[11] htmltools_0.5.5 forcats_1.0.0 plotrix_3.8-2 curl_5.0.1 broom_1.0.5
[16] xgboost_1.7.5.1 Formula_1.2-5 pROC_1.18.4 KernSmooth_2.23-22 htmlwidgets_1.6.2
[21] plyr_1.8.8 lubridate_1.9.2 whisker_0.4.1 lifecycle_1.0.3 iterators_1.0.14
[26] pkgconfig_2.0.3 Matrix_1.6-0 R6_2.5.1 fastmap_1.1.1 plotmo_3.6.2
[31] digest_0.6.33 colorspace_2.1-0 reshape_0.8.9 crosstalk_1.2.0 ggpubr_0.6.0
[36] labeling_0.4.2 randomForest_4.7-1.1 fansi_1.0.4 gbm_2.1.8.1 timechange_0.2.0
[41] httr_1.4.6 polyclip_1.10-4 abind_1.4-5 RPostgreSQL_0.7-5 compiler_4.3.1
[46] proxy_0.4-27 withr_2.5.0 backports_1.4.1 carData_3.0-5 viridis_0.6.4
[51] DBI_1.1.3 biomod2_4.2-4 Rttf2pt1_1.3.12 ggsignif_0.6.4 blockCV_3.1-3
[56] MASS_7.3-60 leaflet_2.1.2 classInt_0.4-9 oai_0.4.0 tools_4.3.1
[61] units_0.8-2 extrafontdb_1.0 rgbif_3.7.7 TeachingDemos_2.12 geodata_0.5-8
[66] fastshap_0.1.0 nnet_7.3-19 glue_1.6.2 gridtext_0.1.5 grid_4.3.1
[71] sf_1.0-14 reshape2_1.4.4 generics_0.1.3 maxnet_0.1.4 gtable_0.3.3
[76] spatstat.data_3.0-1 class_7.3-22 modEvA_3.9.3 tidyr_1.3.0 data.table_1.14.8
[81] xml2_1.3.5 car_3.1-2 utf8_1.2.3 spatstat.geom_3.2-4 foreach_1.5.2
[86] pillar_1.9.0 stringr_1.5.0 splines_4.3.1 lhs_1.1.6 dplyr_1.1.2
[91] lattice_0.21-8 renv_1.0.0 survival_3.5-5 deldir_1.0-9 tidyselect_1.2.0
[96] bib2df_1.1.1 knitr_1.43 gridExtra_2.3 waffle_0.7.0 xfun_0.39
[101] humaniformat_0.6.0 fuzzySim_4.9.9 stringi_1.7.12 lazyeval_0.2.2 yaml_2.3.7
[106] evaluate_0.21 codetools_0.2-19 extrafont_0.19 tibble_3.2.1 BiocManager_1.30.21.1
[111] vip_0.4.0 cli_3.6.1 rpart_4.1.19 munsell_0.5.0 ENMTools_1.1.1
[116] Rcpp_1.0.11 spatstat.random_3.1-5 PresenceAbsence_1.1.11 mda_0.5-4 viridisLite_0.4.2
[121] scales_1.2.1 e1071_1.7-13 crayon_1.5.2 earth_5.3.2 purrr_1.0.1
[126] rlang_1.1.1 cowplot_1.1.1
tidyterra does not make direct use of GDAL, but it is used indirectly via sf or terra.
Try to update all the packages again and let me know if this is this still a issue, thanks
Is this still an issue?