diazale

1KGP_dimred

Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.

gt-dimred

Genotype dimension reduction research. Code for manuscript "UMAP reveals cryptic population structure and phenotype heterogeneity in large genomic cohorts"

topstrat

Genotype dimension reduction and clustering research. Code for manuscript "Topological stratification of continuous genetic variation in large biobanks"

dimension_reduction_workshop

A collection of code to teach dimension reduction in the context of biological sciences

intro_to_r_stats

This is a workship as part of the Fall 2022 McGill Initiative in Computational Medicine.

umap_review

A review of the use of UMAP in population genetics

diazale

dim_red

Dimension reduction and Visualisations for Genetic Data

hgss_regression_workshop

A workshop on introductory linear regression in R developed for graduate students in human genetics. Covers the basics of the concept, its statistical foundation, and some R code to illustrate it.

phd_thesis

PhD thesis for Alex Diaz-Papkovich

advent_of_code_2020

Doing the challenges for 2020!

death_by_car

Tracking collisions between vehicles and pedestrians/cyclists in Canada.

skateway

Tracking the length of the Rideau Canal skating season over the years.

advent_of_code_2021

advent_of_code_2022

advent_of_code_2023

diazale.github.io

end

Exploration of particle tracking focused on extra-nucleolar droplets (ENDs)

hispanic_admix

Studying admixture in the Hispanic population

micm_spring_2023

Statistics and regression workshop for the 2023 MiCM series.

ode_models

Small tutorial on ODEs for QLS

online-cv

A minimal Jekyll Theme to host your resume (CV)

popgenclust

psc_traffic

Tracking Google Maps traffic in Providence