Daniel Hoogestraat's repositories
barcodecop
Enforce exact barcode matches in demultiplexed MiSeq reads
dada2-cli
A command line wrapper and Dockerfile for dada2
deenurp
16S rRNA gene sequence curation and phylogenetic reference set creation
DiscoSnp
DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.
env_base
simple virtualenv starting point with local R-package installs
medirect
multiprocessed ncbi edirect
mmdb-bootstrap
The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.
moose
dna/rna alignment classifier
R-reporting
Docker image for generating plots and reports with R
Rmd-base
Base pieces for producing an html report from Rmd using a Singularity image
taxtastic
Create and maintain phylogenetic "reference packages" of biological sequences.
ya16sdb
A curated subset of 16S rRNA sequences from NCBI
zsh
my zsh environment