[BUG] ERROR: function gen_random_uuid() does not exist at character 83 since version 2.4.0
IOTech17 opened this issue · comments
Describe the bug
When deploying the stack I can see this error on both the db :
ERROR: function gen_random_uuid() does not exist at character 83
and in the app container :
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedFunction) function gen_random_uuid() does not exist
LINE 4: org_uuid UUID DEFAULT gen_random_uuid() NOT NULL,
To Reproduce
Steps to reproduce the behavior:
Followed the steps in the readme and also try deploying the image via portainer stack calling the env file via stack.env
I am using Fedora Core OS as docker host and to build the image
Hi, thanks for reporting.
This is the same issue as #387. We're looking into it, please see #387 (comment)
This should now be fixed in v.2.4.4.
I tried with version 2.4.5, same error :
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedFunction) function gen_random_uuid() does not exist
LINE 4: org_uuid UUID DEFAULT gen_random_uuid() NOT NULL,
@IOTech17 - You need to completely reset the IRIS docker containers with docker compose down --volumes, otherwise the DB will start initialized and won't go through the registration of the extension.
Can you confirm you have done such step?
Yes this is exactly what I did
I tried multiple times on fresh servers and I cannot reproduce the issue. The create_user.sh that is called at DB init should register the extension in the right iris_db DB.
CREATE USER ${POSTGRES_ADMIN_USER} WITH CREATEDB SUPERUSER PASSWORD '${POSTGRES_ADMIN_PASSWORD}';
\c iris_db;
CREATE EXTENSION IF NOT EXISTS pgcrypto CASCADE;
Very interesting,
Could you try to build the image on a fedora core os instance?
I will try to build the image on another linux os
I build the image on Solus OS then send the image to Dockerhub then downloaded the image via Portainer and applied the env via stack.env
Running iriswebapp ...
[2024-01-23 11:50:44 +0000] [7] [INFO] Starting gunicorn 20.1.0
[2024-01-23 11:50:44 +0000] [7] [INFO] Listening at: http://0.0.0.0:8000 (7)
[2024-01-23 11:50:44 +0000] [7] [INFO] Using worker: eventlet
[2024-01-23 11:50:44 +0000] [9] [INFO] Booting worker with pid: 9
2024-01-23 11:50:46 :: INFO :: post_init :: run_post_init :: IRIS v2.4.5
2024-01-23 11:50:46 :: INFO :: post_init :: run_post_init :: Running post initiation steps
2024-01-23 11:50:46 :: INFO :: post_init :: run_post_init :: Attempting to connect to the database...
2024-01-23 11:50:46 :: INFO :: post_init :: run_post_init :: Connecting to database, attempt 1/3
2024-01-23 11:50:46 :: INFO :: post_init :: run_post_init :: Creating all Iris tables
2024-01-23 11:50:46 :: ERROR :: views :: <module> :: Post init failed. IRIS not started
Traceback (most recent call last):
File "/opt/venv/lib/python3.9/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/opt/venv/lib/python3.9/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
psycopg2.errors.UndefinedFunction: function gen_random_uuid() does not exist
LINE 4: org_uuid UUID DEFAULT gen_random_uuid() NOT NULL,
^
HINT: No function matches the given name and argument types. You might need to add explicit type casts.
@whikernel which os are you using to build the image? Wouldn't it be better to provide official image directly via dockerhub?
@IOTech17 I tested on Ubuntu 24 and Debian 12, freshly installed and I have not this issue anymore.
We're not providing images directly on DockerHub mostly because we're lacking resources to do so. Any help with that is more than welcome! Ideally that should be done through the CI/CD once a release is done.
But that wouldn't solve your current issue because the addition of the PG extension is done through a bash script ran in the Postgres instance at boot time.
Are you using our Postgres from the docker-compose, or your own Postgres?
I am using the image build from the docker-compose build. I tried building the image from 2 different Linux OS (Solus OS and Fedora Core OS)
You can try to contact https://www.linuxserver.io/ to help you with the automation for the image ,they have automated the build of many docker image.
@whikernel Same problem when building the image via a ubuntu wsl instance (ubuntu 22.04).
I then sent the image to dockerhub then download it via portainer and apply the env via stack.env
Deploy the app only work on Debian/ubuntu host by directly calling docker-compose up from the folder. I tried using portainer and passing the env to the stack but I get the same error.
Can you check if the image contains all the necessary files once created to start properly.
It would seems that something is missing within the image to be able to work properly via portainer or on other host os.
What I do not understand is why the script is not being called despite the fact that I am using the image built via the command docker-compose build?
@whikernel Do you know why this cannot be built on another other than Ubuntu and debian?
Have you contacted linuxserver.io to help you automate the build and publishing on new image
Hi @IOTech17
You should be able to built the IRIS on other systems than Ubuntu and Debian. We didn't get the chance to test it out yet, but we will.
We didn't contact linuxserver.io, we're just lacking time to do so. Publishing the image is something we meant to do for a while. We want to add it over CI/CD, and add testing in the middle. #395 is a step toward it.
As for the script, it's a good question why it's not calling it. There are visibly quite some issues for deploying IRIS with via portainer that we're going to look into.
Let me know if you need help testing, I can help you with that.