denghb001 / celltalker

Inference of cell-cell communication from single-cell RNAseq data

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celltalker

The goal of celltalker is to infer putative ligand and receptor interactions from single-cell RNAseq data. Briefly, celltalker seeks to evaluate cell-cell communication based on expression of ligands and receptors within and between clusters of cells across experimental groups.

Installation

You can install the development version of celltalker from github using devtools:

library(devtools)
install_github("arc85/celltalker")
library(celltalker)

Additional information

For more information and the celltalker vignette, check out the celltalker website https://arc85.github.io/celltalker/.

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Inference of cell-cell communication from single-cell RNAseq data

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