How to install pyBigWig in windows?
burcakotlu opened this issue · comments
Hi, I'm getting the error below while installing pyBigWig on windows.
Is there a way to solve it?
C:\Users\burcak\Anaconda3>pip install pyBigWig
Collecting pyBigWig
Using cached https://files.pythonhosted.org/packages/b0/e2/cf945d541a10bb9c675f986d5bf0b0268544721054d17cc6260cfcfb3685/pyBigWig-0.3.17.tar.gz
ERROR: Command errored out with exit status 1:
command: 'c:\users\burcak\anaconda3\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\Users\burcak\AppData\Local\Temp\pip-install-0iih0ohf\pyBigWig\setup.py'"'"'; file='"'"'C:\Users\burcak\AppData\Local\Temp\pip-install-0iih0ohf\pyBigWig\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\burcak\AppData\Local\Temp\pip-install-0iih0ohf\pyBigWig\pip-egg-info'
cwd: C:\Users\burcak\AppData\Local\Temp\pip-install-0iih0ohf\pyBigWig
Complete output (5 lines):
Traceback (most recent call last):
File "", line 1, in
File "C:\Users\burcak\AppData\Local\Temp\pip-install-0iih0ohf\pyBigWig\setup.py", line 24, in
for e in sysconfig.get_config_vars('BLDLIBRARY')[0].split():
AttributeError: 'NoneType' object has no attribute 'split'
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
I honestly have no clue, presumably you would need to use the linux subsystem on Windows 10. This particular problem I could fix in the code, but I fully suspect that there would be many issues installing dependencies on Windows.
For reference one can use WSL or WSL2 on windows. There's no other specific support for it.