[bwGetOverlappingIntervalsCore] Got an error
wuzhaoqi1015 opened this issue · comments
巫昭祺 commented
In [47]: bw = pyBigWig.open('hg19.100way.phyloP100way.bw')
In [48]: bw.stats('chr10', 90984924, 90984926)
[bwGetOverlappingIntervalsCore] Got an error
Out[48]: [None]
the reason is?
巫昭祺 commented
[bwGetOverlappingIntervalsCore] Got an error
Devon Ryan commented
The most likely cause is running out of memory. There are actually 7 places in the code where this can be triggered, I hadn't foreseen needing to determine which was the root cause (mea culpa).
巫昭祺 commented
The most likely cause is running out of memory. There are actually 7 places in the code where this can be triggered, I hadn't foreseen needing to determine which was the root cause (mea culpa).
thanks