ddiannae / ARACNE-multicore

ARACNE-multicore

Python wrapper to run a multicore version of ARACNe2 with a SingularityCE container companion.

Pre-requisites

• singularity-ce >= 3.8.0

Installation

1. Install SingularityCE
2. Clone this repository

   git clone https://github.com/ddiannae/ARACNE-multicore.git
   cd ARACNE-multicore/
   

3. Build the cointainer

   sudo singularity build aracne_multicore.sif aracne_multicore.def
   

4. Run the container with an appropiate script

   ./aracne_multicore.sif examples/aracne_matrix.py