davymoon's repositories
alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
Awesome-pytorch-list
A comprehensive list of pytorch related content on github,such as different models,implementations,helper libraries,tutorials etc.
ccs
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
chroma-pytorch
Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
cs231n.github.io
Public facing notes page
d2l-en
Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 300 universities from 55 countries including Stanford, MIT, Harvard, and Cambridge.
d2l-zh
《动手学深度学习》：面向中文读者、能运行、可讨论。中英文版被55个国家的300所大学用于教学。
ExpansionHunter
A tool for estimating repeat sizes
handson-ml2
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.
imagen-pytorch
Implementation of Imagen, Google's Text-to-Image Neural Network, in Pytorch
Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
papers_for_protein_design_using_DL
List of papers about Proteins Design using Deep Learning
ProteinMPNN
Code for the ProteinMPNN paper
python_for_image_processing_APEER
https://www.youtube.com/playlist?list=PLHae9ggVvqPgyRQQOtENr6hK0m1UquGaG
python_for_microscopists
https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1
pytorch-grad-cam
Advanced AI Explainability for computer vision. Support for CNNs, Vision Transformers, Classification, Object detection, Segmentation, Image similarity and more.
pytorch-image-models
PyTorch image models, scripts, pretrained weights -- ResNet, ResNeXT, EfficientNet, NFNet, Vision Transformer (ViT), MobileNet-V3/V2, RegNet, DPN, CSPNet, Swin Transformer, MaxViT, CoAtNet, ConvNeXt, and more
pytorch-tutorial
PyTorch Tutorial for Deep Learning Researchers
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
scrnaseq
Pipelines for single-cell RNA-Seq analysis
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
SpliceAI
A deep learning-based tool to identify splice variants
stable-diffusion
A latent text-to-image diffusion model
v2ray-core
A platform for building proxies to bypass network restrictions.
x-transformers
A simple but complete full-attention transformer with a set of promising experimental features from various papers