davidliwei

awesome-CRISPR

List of software/websites/databases/other stuff for genome engineering

rnaseqmut

RNA-Seq Mutation Detection

RNASeqReadSimulator

RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.

mageck

Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

mageck2

A next generation of CRISPR screening analysis tool

PS

Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights in single-cell perturbation datasets.

mageck2-doc

Documentations for mageck2

NGStools

Scripts and tools for Next Generation Sequencing

Homework_2020

Homeworks

Lab_2020

Repository for all labs for STAT115 for 2020

mageck2-demo

scGPT

SKYtree

Source codes for building glioma evolutionary trees from SKY data