Error in dbExists(.tikzInternal[["dictionary"]], sha1(key))
cstrbl opened this issue · comments
My code was running without problems once - I got exactly what I wanted. But whenever I try to run it again I get an error.
My rnw contains of:
\documentclass{article}
\begin{document}
<<dev='tikz'>>=
plot(1)
@
\end{document}running it gives me:
Lade n�tiges Paket: knitr
Warnmeldung:
Paket 'knitr' wurde unter R Version 3.2.5 erstellt
processing file: test.Rnw
|...................... | 33%
ordinary text without R code
|........................................... | 67%
label: unnamed-chunk-1 (with options)
List of 1
$ dev: chr "tikz"
|.................................................................| 100%
ordinary text without R code
output file: test.tex
[1] "test.tex"
Running pdflatex.exe on test.tex...completed
Created PDF: C:/Users/Christina/Desktop/test/test.pdf
Issues: 1 badboxbut in the pdf file I get instead of the plot:
plot(1)
## Error in dbExists(.tikzInternal[["dictionary"]], sha1(key)): Fehler
bei der Auswertung des Argumentes ’key’ bei der Methodenauswahl
## fr Funktion ’dbExists’: Fehler in sha1(key) : Objekt ’C sha1 object’
nicht gefunden(When I was running it the first time the plot showed up just fine.)
The test.tex also contains this error:
\documentclass{article}\usepackage[]{graphicx}\usepackage[]{color}
%% maxwidth is the original width if it is less than linewidth
%% otherwise use linewidth (to make sure the graphics do not exceed the margin)
\makeatletter
\def\maxwidth{ %
\ifdim\Gin@nat@width>\linewidth
\linewidth
\else
\Gin@nat@width
\fi
}
\makeatother
\definecolor{fgcolor}{rgb}{0.345, 0.345, 0.345}
\newcommand{\hlnum}[1]{\textcolor[rgb]{0.686,0.059,0.569}{#1}}%
\newcommand{\hlstr}[1]{\textcolor[rgb]{0.192,0.494,0.8}{#1}}%
\newcommand{\hlcom}[1]{\textcolor[rgb]{0.678,0.584,0.686}{\textit{#1}}}%
\newcommand{\hlopt}[1]{\textcolor[rgb]{0,0,0}{#1}}%
\newcommand{\hlstd}[1]{\textcolor[rgb]{0.345,0.345,0.345}{#1}}%
\newcommand{\hlkwa}[1]{\textcolor[rgb]{0.161,0.373,0.58}{\textbf{#1}}}%
\newcommand{\hlkwb}[1]{\textcolor[rgb]{0.69,0.353,0.396}{#1}}%
\newcommand{\hlkwc}[1]{\textcolor[rgb]{0.333,0.667,0.333}{#1}}%
\newcommand{\hlkwd}[1]{\textcolor[rgb]{0.737,0.353,0.396}{\textbf{#1}}}%
\let\hlipl\hlkwb
\usepackage{framed}
\makeatletter
\newenvironment{kframe}{%
\def\at@end@of@kframe{}%
\ifinner\ifhmode%
\def\at@end@of@kframe{\end{minipage}}%
\begin{minipage}{\columnwidth}%
\fi\fi%
\def\FrameCommand##1{\hskip\@totalleftmargin \hskip-\fboxsep
\colorbox{shadecolor}{##1}\hskip-\fboxsep
% There is no \\@totalrightmargin, so:
\hskip-\linewidth \hskip-\@totalleftmargin \hskip\columnwidth}%
\MakeFramed {\advance\hsize-\width
\@totalleftmargin\z@ \linewidth\hsize
\@setminipage}}%
{\par\unskip\endMakeFramed%
\at@end@of@kframe}
\makeatother
\definecolor{shadecolor}{rgb}{.97, .97, .97}
\definecolor{messagecolor}{rgb}{0, 0, 0}
\definecolor{warningcolor}{rgb}{1, 0, 1}
\definecolor{errorcolor}{rgb}{1, 0, 0}
\newenvironment{knitrout}{}{} % an empty environment to be redefined in TeX
\usepackage{alltt}
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\begin{document}
\begin{knitrout}
\definecolor{shadecolor}{rgb}{0.969, 0.969, 0.969}\color{fgcolor}\begin{kframe}
\begin{alltt}
\hlkwd{plot}\hlstd{(}\hlnum{1}\hlstd{)}
\end{alltt}
{\ttfamily\noindent\bfseries\color{errorcolor}{\#\# Error in dbExists(.tikzInternal[["{}dictionary"{}]], sha1(key)): Fehler bei der Auswertung des Argumentes 'key' bei der Methodenauswahl\\\#\# für Funktion 'dbExists': Fehler in sha1(key) : Objekt 'C\_sha1\_object' nicht gefunden}}\end{kframe}
\includegraphics[width=\maxwidth]{figure/unnamed-chunk-1-1}
\end{knitrout}
\end{document}I used to run another code first but was able to reproduce the error with this code. In the other code I used options(tikzMetricsDictionary="tikz.metrics") and noticed that the tikz.metrics was 13 kb the first time and 0 kb everytime after. I also noted that in the example mentioned above the test-tikzDictionary is 0 kb when the code produces the error.
now some more info:
the tikz in figure contains of:
% Created by tikzDevice version 0.10.1 on 2017-06-27 21:42:47
% !TEX encoding = UTF-8 Unicode
\documentclass{article}
\nonstopmode
\usepackage{tikz}
\usepackage[active,tightpage,psfixbb]{preview}
\PreviewEnvironment{pgfpicture}
\setlength\PreviewBorder{0pt}
\newcommand{\SweaveOpts}[1]{} % do not interfere with LaTeX
\newcommand{\SweaveInput}[1]{} % because they are not real TeX commands
\newcommand{\Sexpr}[1]{} % will only be parsed by R
\begin{document}
\begin{tikzpicture}[x=1pt,y=1pt]
\definecolor{fillColor}{RGB}{255,255,255}
\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (505.89,505.89);
\begin{scope}
\path[clip] ( 49.20, 61.20) rectangle (480.69,456.69);
\definecolor{drawColor}{RGB}{0,0,0}
\path[draw=drawColor,line width= 0.4pt,line join=round,line cap=round] (264.94,258.95) circle ( 2.25);
\end{scope}
\end{tikzpicture}
\end{document}the general log is
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (MiKTeX 2.9) (preloaded format=pdflatex 2015.8.31) 27 JUN 2017 21:42
entering extended mode
**test.tex
(C:\Users\Christina\Desktop\test\test.tex
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, afrikaans, ancientgreek, ar
abic, armenian, assamese, basque, bengali, bokmal, bulgarian, catalan, coptic,
croatian, czech, danish, dutch, esperanto, estonian, farsi, finnish, french, ga
lician, german, german-x-2013-05-26, greek, gujarati, hindi, hungarian, iceland
ic, indonesian, interlingua, irish, italian, kannada, kurmanji, latin, latvian,
lithuanian, malayalam, marathi, mongolian, mongolianlmc, monogreek, ngerman, n
german-x-2013-05-26, nynorsk, oriya, panjabi, pinyin, polish, portuguese, roman
ian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, swissgerm
an, tamil, telugu, turkish, turkmen, ukenglish, ukrainian, uppersorbian, usengl
ishmax, welsh, loaded.
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LaTeX Font Info: ... okay on input line 53.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 53.
LaTeX Font Info: ... okay on input line 53.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 53.
LaTeX Font Info: ... okay on input line 53.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 53.
LaTeX Font Info: ... okay on input line 53.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 53.
LaTeX Font Info: ... okay on input line 53.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 53.
LaTeX Font Info: ... okay on input line 53.
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[Loading MPS to PDF converter (version 2006.09.02).]
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Package color Info: Redefining color shadecolor on input line 55.
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(Font) Font shape `OT1/cmtt/m/n' tried instead on input line 57.
Missing character: There is no ? in font cmtt10!
Missing character: There is no ? in font cmtt10!
Overfull \hbox (27.74675pt too wide) in paragraph at lines 61--61
[]\OT1/cmtt/m/n/10 ## Error in dbExists(.tikzInternal[["dictionary"]], sha1(key
)): Fehler
[]
Overfull \hbox (35.30666pt too wide) in paragraph at lines 61--61
\OT1/cmtt/m/n/10 ## fr Funktion 'dbExists': Fehler in sha1(key) : Objekt 'C[]sh
a1[]object'
[]
<figure/unnamed-chunk-1-1.pdf, id=1, 505.89pt x 505.89pt>
File: figure/unnamed-chunk-1-1.pdf Graphic file (type pdf)
<use figure/unnamed-chunk-1-1.pdf>
Package pdftex.def Info: figure/unnamed-chunk-1-1.pdf used on input line 62.
(pdftex.def) Requested size: 345.0pt x 345.00414pt.
Overfull \hbox (15.0pt too wide) in paragraph at lines 62--63
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[1
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p/test/figure/unnamed-chunk-1-1.pdf>]
(C:\Users\Christina\Desktop\test\test.aux) )
Here is how much of TeX's memory you used:
1250 strings out of 493921
16889 string characters out of 3144864
67078 words of memory out of 3000000
4577 multiletter control sequences out of 15000+200000
3808 words of font info for 15 fonts, out of 3000000 for 9000
841 hyphenation exceptions out of 8191
27i,5n,19p,325b,244s stack positions out of 5000i,500n,10000p,200000b,50000s
<C:/Program Files (x86)/MiKTeX 2.9/
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Output written on test.pdf (1 page, 25614 bytes).
PDF statistics:
16 PDF objects out of 1000 (max. 8388607)
0 named destinations out of 1000 (max. 500000)
6 words of extra memory for PDF output out of 10000 (max. 10000000)the log in figure is
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (MiKTeX 2.9) (preloaded format=pdflatex 2015.8.31) 27 JUN 2017 21:42
entering extended mode
**unnamed-chunk-1-1.tikz
(C:\Users\Christina\Desktop\test\figure\unnamed-chunk-1-1.tikz
LaTeX2e <2011/06/27>
Babel <v3.8m> and hyphenation patterns for english, afrikaans, ancientgreek, ar
abic, armenian, assamese, basque, bengali, bokmal, bulgarian, catalan, coptic,
croatian, czech, danish, dutch, esperanto, estonian, farsi, finnish, french, ga
lician, german, german-x-2013-05-26, greek, gujarati, hindi, hungarian, iceland
ic, indonesian, interlingua, irish, italian, kannada, kurmanji, latin, latvian,
lithuanian, malayalam, marathi, mongolian, mongolianlmc, monogreek, ngerman, n
german-x-2013-05-26, nynorsk, oriya, panjabi, pinyin, polish, portuguese, roman
ian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, swissgerm
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(C:\Users\Christina\Desktop\test\figure\unnamed-chunk-1-1.aux)
LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 20.
LaTeX Font Info: ... okay on input line 20.
LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 20.
LaTeX Font Info: ... okay on input line 20.
LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 20.
LaTeX Font Info: ... okay on input line 20.
LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 20.
LaTeX Font Info: ... okay on input line 20.
LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 20.
LaTeX Font Info: ... okay on input line 20.
LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 20.
LaTeX Font Info: ... okay on input line 20.
ABD: EveryShipout initializing macros
("C:\Program Files (x86)\MiKTeX 2.9\tex\context\base\supp-pdf.mkii"
[Loading MPS to PDF converter (version 2006.09.02).]
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Preview: Fontsize 10pt
Preview: PDFoutput 1
Overfull \hbox (160.89pt too wide) in paragraph at lines 31--31
[][]
[]
Preview: Tightpage 0 0 0 0
[1
Non-PDF special ignored!
Non-PDF special ignored!]
(C:\Users\Christina\Desktop\test\figure\unnamed-chunk-1-1.aux) )
Here is how much of TeX's memory you used:
11084 strings out of 493921
227649 string characters out of 3144864
249503 words of memory out of 3000000
14215 multiletter control sequences out of 15000+200000
3640 words of font info for 14 fonts, out of 3000000 for 9000
841 hyphenation exceptions out of 8191
55i,2n,54p,400b,472s stack positions out of 5000i,500n,10000p,200000b,50000s
Output written on unnamed-chunk-1-1.pdf (1 page, 1343 bytes).
PDF statistics:
9 PDF objects out of 1000 (max. 8388607)
0 named destinations out of 1000 (max. 500000)
13 words of extra memory for PDF output out of 10000 (max. 10000000)and my session info is
> sessionInfo()
R version 3.2.1 (2015-06-18)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 8 x64 (build 9200)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 LC_MONETARY=German_Germany.1252
[4] LC_NUMERIC=C LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.2.1hope someone can help... it's my first question here - if something is missing please let me know!
Thanks, this is strange. Could you please post two zip archives: One with your entire directory after the first run, and one after the second run? Please also include a call to of sessionInfo() in your .Rnw file.
I attached the zip file from the test I described above when the error shows up. I don’t have a zip from the time before the error showed up so I can’t upload that.
However I do have a backup of the slides I used to test it with before (a bit more complex code). See slides_no_error.zip for that version and slides_error.zip for the version with the error in it.
The slides_no_error.zip runs fine as long as I don’t delete the tikz.metrics and the figures/cache folders or change anything regarding the figures. To produce the version I added the sessioninfo and re run it with the “old” figures/cache/tikz.metrics.
The slides_error.zip is the result of deleting everything but the slides.rnw and clicking compile pdf in R Studio again (the error also shows up when I just delete the cache folder, deleting just the figures leads to a figures/chunk… not found error and deleting only the metrics leads to the first figure not being shown at all and the second figure just showing the inner part of the figure (graphs + data points)).
slides_error.zip
slides_no_error.zip
If you need anything else please let me know!
I don't know what the problem was but I uninstalled everything (R, R Studio, Miktex) and reinstalled the latest versions. Now everything is working fine... issue can be closed. Thank you for the help!!