danknights / mwas

Perform microbiome-wide association studies with a variety of models

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Output probability from random forests, knn, log. regression, svm, etc.

danknights opened this issue · comments

RF: predictStruct$prob
SVM: Included in S3 predict inheritor as $probabilities
KNN: Ad-hoc calculation by number of votes over number of neighbors (edit; $prob in return attribute after running KNN)
GLMnet: has a probs (when response used)?