danielshaowers

matplotlib_for_papers

Handout for the tutorial "Creating publication-quality figures with matplotlib"

scientific-visualization-book

An open access book on scientific visualization using python and matplotlib

intellij-discord-rp

💎 A highly customizable IntelliJ plugin for Discord Rich Presence

flash-attention

Fast and memory-efficient exact attention

TANGLE

Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

SurvPath

Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

CONCH

A vision-language foundation model for computational pathology - Nature Medicine

iguana

Interpretable Gland-Graph Networks

histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

Histopathology-Datasets

Ressources of histopathology datasets

snapcast

Synchronous multiroom audio player

mda

Revealing Hidden Patterns in Deep Neural Network Feature Space Continuum via Manifold Learning (Nature Communications, 2023)

MuTILs_Panoptic

Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs model and PanopTILs dataset. medRxiv 2022.01.08.22268814.

bidirectional-cross-attention

A simple cross attention that updates both the source and target in one step

CrossViT-pytorch

Implementation of CrossViT: Cross-Attention Multi-Scale Vision Transformer for Image Classification

Augmentation-PyTorch-Transforms

Image data augmentation on-the-fly by add new class on transforms in PyTorch and torchvision.

IBMIL

CVPR 2023 Highlight

HistomicsTK

A Python toolkit for pathology image analysis algorithms.

tuning_playbook

A playbook for systematically maximizing the performance of deep learning models.

mixehrS

curriculum-dropout-pytorch

curriculum dropout implementation with pytorch

awesome-ai-papers

A curated list of the most impressive AI papers

AttentionDeepMIL

Implementation of Attention-based Deep Multiple Instance Learning in PyTorch

ManimML

ManimML is a project focused on providing animations and visualizations of common machine learning concepts with the Manim Community Library.

TransMIL

TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification

valis

Virtual Alignment of pathoLogy Image Series

ANHIR_MW

Software used by the AGH team during the ANHIR challenge.

IMPRESS

thanos-code

Code release for the paper Perfectly Balanced: Improving Transfer and Robustness of Supervised Contrastive Learning

SupCon-Framework

Implementation of Supervised Contrastive Learning with AMP, EMA, SWA, and many other tricks