Dawlat El-Said's repositories
flywheel_utils
python flywheel-sdk notebooks used for data extraction
scsnl_create_npvisit_batchfiles
various automation and standardization scripts SEE WIKI FOR DETAILED USAGE! (https://github.com/daelsaid/scsnl_create_npvisit_batchfiles/wiki)
scsnl_project_documentation_utils
general utils and merger scripts to help standardize documentation/excel files etc.
scsnl_utils
various utils for scsnl imaging and project specific data processing
2022_aml_template
scsnl aml preprocessing scripts + template
full_reorg_and_processing_fmri
first attempt at complete reorganization of fmri and behav data into bids format. one liners for docker submissions -- bids validation, fmriprep, fitlins first level.
scsnl_mathfun_analysis
2019 mathfun scripts
vmreact
https://doi.org/10.1016/j.jpsychires.2019.04.023
2022_ra_practice_project_template
template for RAs to practice running preprocessing for a test subject
2023_mld_dnn_number_crunching
dataset-number-crunching-for-grants
brainiak
Brain Imaging Analysis Kit
cross-project-duplicate-check-module
Checks for duplicate records (as defined by a certain number of matching fields) across one or more projects.
ezdiff
orig fxn written by cdla, paper establishing methodology via poldrack
fmri_processing_workflows
automated bids file generation, and bidsifying datasets
met_project_template
met template scripts
neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
pybids
Python tools for querying and manipulating BIDS datasets.
redcap
redcap api scripts used for best + various extraction and merging scripts
scsnl_export_results_and_visualization
scsnl thresholding of results data analysis output + notebooks for visualization
scsnl_met_virtualization
various scripts and tasks used in the virtualization of our active data collection projects
scsnl_np_auditing_utils
binder repo to allow for executable notebooks
scsnlScripts
all lab-wide scripts (i.e. preprocessmri) executable with mlsubmit. Includes utils.
TaskBoard
A Kanban-inspired app for keeping track of things that need to get done. (Don't forget to read the Wiki page!)
unison
Unison file synchronizer