dabai2's repositories
10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
ATAC-pipe
Analysis pipeline for ATAC-seq Data
awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bios201
Course material for "BIOS 201: Next-generation sequencing and applications"
bpnet
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
chip-seq_preprocess
A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.
chipseq
ChIP-seq peak-calling, QC and differential analysis pipeline.
deeplearning-biology
A list of deep learning implementations in biology
EmbryoTimecourse2018
Data and analysis scripts for our Embryo Timecourse paper.
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
liulab
Official website for Liu Lab
myrepo
testing
nextjs-notion-starter-kit
Deploy your own Notion-powered website in minutes with Next.js and Vercel.
pipelines_for_ChIP-seq_analysis
Pipelines for ChIP-seq analysis, such as peak calling, differential enrichment detection, and pausing index calculation for PolII.
python_tutorial
Python机器学习体系构建教程
RSoptSC
Cell-cell communication and lineage inference for scRNA-seq data
scATACseq-analysis-notes
my notes for scATACseq analysis
scRNA-seq-workshop-Fall-2019
Harvard FAS informatics scRNAseq workshop website
slingshot
Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
SnapATAC
Single Nucleus Analysis Pipeline for ATAC-seq
tutorials
CellProfiler tutorial pipelines and images