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czimaginginstitute / MotionCor3

Anisotropic correction of beam induced sample motion for cryo-electron microscopy and tomography

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undefined reference to `operator delete(void*, unsigned long) in library

nym4432018 opened this issue · comments

commented

MotionCor3/Lib/libmrcfile.a(CLoadMrc.o): In function Mrc::CLoadMrc::CLoadMrc()': /home/shawn.zheng/Projs/Mrcfile/../../Projs/Mrcfile/App/CLoadMrc.cpp:14: undefined reference to operator delete(void*, unsigned long)'
/home/shawn.zheng/Projs/Mrcfile/../../Projs/Mrcfile/App/CLoadMrc.cpp:15: undefined reference to operator delete(void*, unsigned long)' /home/shawn.zheng/Projs/Mrcfile/../../Projs/Mrcfile/App/CLoadMrc.cpp:16: undefined reference to operator delete(void*, unsigned long)'

otionCor3/Lib/libmrcfile.a(CLoadMrc.o): In function Mrc::CLoadMrc::~CLoadMrc()': /home/shawn.zheng/Projs/Mrcfile/../../Projs/Mrcfile/App/CLoadMrc.cpp:24: undefined reference to operator delete(void*, unsigned long)'
/home/shawn.zheng/Projs/Mrcfile/../../Projs/Mrcfile/App/CLoadMrc.cpp:25: undefined reference to operator delete(void*, unsigned long)' /home/funabiki_lab/32TBSATA/CryoEM/MotionCor3/Lib/libmrcfile.a(CLoadMrc.o):/home/shawn.zheng/Projs/Mrcfile/../../Projs/Mrcfile/App/CLoadMrc.cpp:26: more undefined references to operator delete(void*, unsigned long)' follow

MotionCor3/Lib/libutil.a(Util_LinEqs.o): In function Util_LinEqs::DoIt(float*, float*, int)': /home/shawn.zheng/Projs/Util/Util_LinEqs.cpp:26: undefined reference to __cxa_throw_bad_array_new_length'
/home/shawn.zheng/Projs/Util/Util_LinEqs.cpp:27: undefined reference to __cxa_throw_bad_array_new_length' /home/shawn.zheng/Projs/Util/Util_LinEqs.cpp:28: undefined reference to __cxa_throw_bad_array_new_length'

MotionCor3/Lib/libutil.a(Util_LinEqs.o): In function Util_LinEqs::mSwapRows(float*, float*, int)': /home/shawn.zheng/Projs/Util/Util_LinEqs.cpp:97: undefined reference to __cxa_throw_bad_array_new_length'
/home/funabiki_lab/32TBSATA/CryoEM/MotionCor3/Lib/libutil.a(Util_Thread.o): In function Util_Thread::~Util_Thread()': /home/shawn.zheng/Projs/Util/Util_Thread.cpp:18: undefined reference to operator delete(void*, unsigned long)'
collect2: error: ld returned 1 exit status
make: *** [exe] Error 1

Any suggestions?

commented

@nym4432018: this seems like g++ issue. Can you please run "g++ --version" and let me what it prints out?

commented

@nym4432018: this seems like g++ issue. Can you please run "g++ --version" and let me what it prints out?

Thanks a lot for the help.
g++ (GCC) 4.8.5 20150623 (Red Hat 4.8.5-44)

commented

@nym4432018: this seems like g++ issue. Can you please run "g++ --version" and let me what it prints out?

It compiled successfully after this solution:

yum install gcc-c++
yum install cmake
yum install centos-release-scl
yum install devtoolset-8-gcc devtoolset-8-gcc-c++
scl enable devtoolset-8 -- bash

Thanks a lot for bringing out the g++ compiler version.