Wishlist for susie finemapping piepline
SamuelSun2000 opened this issue · comments
We plan to:
- Unify interface for mvsusie
- Robustness against mismatch of covar and phenotype, with regid specification
- Minimize the need of pre-processing to get 2
- 1. In [uni_susie_1], make the pipeline can accept format of a list, each row containing a single cell data & the file address and fixed some bugs.
- 2. Subset the recipe
and make it into phenotype list and covariate list in the command generator section. Process the covariate files Then the input list for [uni_susie_1] should be ready.
Workflow Optimization
- 3. Isolate step [uni_susie_2] from step 1. Then, that function can be used as reading lists of susie objects.
- 4. maybe In [uni_susie_1], unwrap the list
fitted
so that the result can be easier to handle, instead of a list of susie objects.