Strange error occurs while loading the susieR from stephenlab.sif
hsun3163 opened this issue · comments
While testing the commonly used stephenlab.sif the following error occurs. The same error also occurs on other variants of the stephenlab.sif, including the stephenlab_flashier.sif. This is strange because I know for a fact that susieR are installed after R 4.0, and after a while, the error just subsides.
hs3163@csglogin:~$ singularity shell /mnt/vast/hpc/csg/containers/stephenslab.sif
Singularity>
Singularity>
Singularity> R
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
>
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
[Previously saved workspace restored]
>
>
Save workspace image? [y/n/c]:
> library("susieR")
Error: package or namespace load failed for 'susieR':
package 'susieR' was installed before R 4.0.0: please re-install it
As shown below the problem subsides after a while.
hs3163@csglogin:~/GIT/xqtl-pipeline/container/singularity$ singularity shell /mnt/vast/hpc/csg/containers/stephenslab.sif
Singularity> R
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
[Previously saved workspace restored]
> library("susieR")
>