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cssmillie / ulcerative_colitis

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New Seurat version

f6v opened this issue · comments

commented

As a heads-up, I don't think the following works with the latest Seurat:

epi.seur = SetIdent(epi.seur, ident.use=epi.seur@data.info$phenograph.k750)
fib.seur = SetIdent(fib.seur, ident.use=fib.seur@data.info$phenograph.k250)
imm.seur = SetIdent(imm.seur, ident.use=imm.seur@meta.data$phenograph.k250)

I updated the code to:

epi.seur = SetIdent(epi.seur, value = 'phenograph.k750')
fib.seur = SetIdent(fib.seur, value = 'phenograph.k250')
imm.seur = SetIdent(imm.seur, value = 'phenograph.k250')