cssmillie / ulcerative_colitis

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Issue reproducing gene signatures distribution

bio-la opened this issue · comments

Hi Christopher,
we'd like to reproduce Fig 4C.

What is each point overlaid on violins?

  • Average geneset x cell? therefore, the distribution's mean is the mean of the geneset?
    Is this the distributions you're testing with the wilcoxon test?

  • Gene expression x cell? it would explain why the IL17 panel is much more sparse.

Thanks