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Computing in Signals and Images in Medicine Laboratory (CSIM-Toolkits)

Computing in Signals and Images in Medicine Laboratory

CSIM-Toolkits

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A research group focused on biomedical image and signal applications.

Location:Ribeirão Preto/Brazil

Home Page:http://dcm.ffclrp.usp.br/csim

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Computing in Signals and Images in Medicine Laboratory's repositories

ITK

Repository to share codes implemented to run on ITK platform.

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Slicer-LesionSimulatorExtension

3D Slicer extension that provides a toolkit for Multiple Sclerosis lesion simulation in multimodal MRI images, such as T1, T2, T2-FLAIR and DTI scalar maps.

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ROBEXBrainExtraction

3D Slicer extension to offer a brain extraction algorithm for MRI structural images. This extension has the ROBEX brain extraction implementation.

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ImageJ

Repository for plugins, macros and scripts available to run in ImageJ.

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LesionSpotlightExtension

3D Slicer extension that provides T2-FLAIR MRI manipulation methods in order to increase contrast and segment hyperintense Multiple Sclerosis lesions

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AnomalousDiffusionFilters

Repository to code and documentation of Anomalous Diffusion Filter Module (Insight-Journal)

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BabyBrain

A 3D Slicer extension for neonate/fetal brain analysis and segmentation

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BrainTissuesExtension

3D Slicer extension to segment different brain structures and tissues in MRI structural images.

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ITKAutomaticConductanceCalculator

Official repository to Automatic Conductance Image Calculator to ITK Remote Module.

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MRCardio

3D Slicer extension that provides a set of modules of segmentation, registration and cardiac images analysis

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AnomalousFiltersExtension

3D Slicer extension that provides several approaches in order to apply the anomalous spatial filters on medical images.

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CardioCSIM

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ImageCharacterizationExtension

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ImageFeatureExtraction

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MSLesionTrackExtension

3D Slicer extension to segment Multiple Sclerosis lesions on DTI and Structural MRI images

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Scripts

Simples scripts and codes that are useful to the daily basis routine in a computational laboratory.

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SlicerBrainVolumeRefinement

Extension for the Brain Volume Refinement methods (BVeR)

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SlicerDiffusionComplexityMap

Slice module to offer the Diffusion Complexity Map algorithm

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csim-toolkits.github.io

CSIM organization website page

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ITKAnomalousDiffusionFilters

Official repository to CSIM ITKAnomalousDiffusionFilters to ITK builds and remote repository

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opencl

Any application related to the practice of parallel computing using OPENCL

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TextureAnalysisExtension

Extension to extract Texture Features from MRI.

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TiCCE

Tissue Characterization and Classification Extension for 3DSlicer

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