CristianRiccio

celegans-pathogen-adaptation

This repository contains all the code that was used by Cristian Riccio in the Burton et al. 2019 paper called "C. elegans transgenerationally adapts to infection by regulating cysteine synthases in progeny" for the RNA-seq analysis and genome assembly

snakemake-slurm-profiles

Configuration profiles for running snakemake on a SLURM server

VEP_Finder

VEP Finder

coursera

courseraRepo

datasciencecoursera

Coursera assignment

datasharing

The Leek group guide to data sharing

do-the-thing

:-)

friendly-github-intro

This is a beginner friendly introduction to making open, version-controlled, and collaborative projects using Github.

fusioncatcher

Finder of Somatic Fusion Genes in RNA-seq data

getCleanData

GIT-Course

Newbie

gitCourse

mluci

Code used for the retrieval of the data of Meloidogyne luci (root-knot nematode)

Mytest

ProgrammingAssignment2

Repository for Programming Assignment 2 for R Programming on Coursera

python-basic

Python3 teaching materials for basic introduction to Python (2 days)

python-data-science

python-intro

Materials for the "Introduction to Solving Biological Problems with Python" course

r-intro

Cambridge Basic R Course

RepData_PeerAssessment1

Peer Assessment 1 for Reproducible Research

Tutorial-in-Dimensionality-Reduction-Methods

workshop-intro-to-git

workshop-make