Generate gtf output from FusionChrom and FusionTranscript

Question

Generate gtf output from FusionChrom and FusionTranscript

creisle opened this issue 6 years ago · comments

Caralyn Reisle commented 6 years ago

Create the gtf output from the FusionTranscript and FusionChromosome objects generated using MAVIS

Format for GTF

https://uswest.ensembl.org/info/website/upload/gff.html

Depends-on: #9 #10

Enes Ergin · Answer 1 · Mon Oct 15 2018 04:23:43 GMT+0800 (China Standard Time)

GTF output function has been created with tests. FusionTranscript and FusionChromosome objects could be used combined into annotation object and then saved to GTF using this function.

PR-#18